Enter gene symbols (example: "Cxcl12, Fos, Lect1, Lepr, Vcam1, Fosb") and search terms, example: "mesenchymal stem cell, multipotent stem cell, skeletal stem cell, stem cell, progenitor cell", respectively (comma-separated).
Based on pubmed, articles containing the respective term (all genes-against-all search term combinations) are found and the respective counts reported, both per gene (bar chart) and as a heatmap (gene-search term combinations).
For every input gene, the most recent 100 literature references can be downloaded as CSV-file (download button).
For documentation, see https://github.com/marina-leer/pubCounteR
Leer, M., Soultoukis, G.A., Jaehnert, M., Oveisi, M., Walther, D., Schulz, T.J. (2025) pubCounteR: an R package for interrogating published literature for experimentally-derived gene lists within a user-defined biological context. Front. Bioinform., doi:10.3389/fbinf.2025.1523184
Contact: support.bioinftools@mpimp-golm.mpg.de